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Direct bond formation between two C-H bonds is most challenging but imperative for efficient organic synthesis. Recently, significant progress has been made in direct functionalization of indole through oxidative coupling reactions with other nucleophiles such as enolates and phenols. Both intermolecular and intramolecular coupling reactions can be conducted under the action of base/oxidants or oxidants alone. Coupling typically occurs at the 3-position of indole moiety due to intrinsic nucleophilicity at this position. Coupling at the 2- or 4-position of the indole moiety has been observed for some special substrates. These coupling reactions provide powerful tools for quickly establishing the core structures of a number of indole alkaloids.

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Metal catalyst and ligand design,
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2?-alpha-C-Methyl-2?-beta-C-fluorouridine and its phosphoramidate prodrugs were synthesized and evaluated for their inhibitory activity against HCV. The structure?activity relationship analysis of the phosphoramidate moiety found that 17m, 17q, and 17r exhibit potent activities against HCV, with EC50 values of 1.82 ± 0.19, 0.88 ± 0.12, and 2.24 ± 0.22 muM, respectively. The docking study revealed that the recognition of the 2?-beta-F by Arg158, 3?-OH by N291, and the Watson?Crick pairing with the template allowed 23 to form the in-line conformation necessary for its incorporation into the viral RNA chain.

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Metal catalyst and ligand design,
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The activation of a alpha-class carbonic anhydrase (CAs, EC 4.2.1.1) from Trypanosoma cruzi (TcCA) was investigated with the best known classes of activators, the amino acids and aromatic/heterocyclic amines. The best TcCA activators were L-/D-DOPA and 4-amino-L-phenylalanine, which had activation constants in the range of 0.38?0.83 muM. Low micromolar activators were also L-/D-Trp, L-/D-Tyr, L-Gln, histamine and serotonin (KAs of 1.79?4.92 muM), whereas L-/D-His, L-/D-Phe and L-Asp were less effective activators (KAs of 6.39?18.7 muM). Amines such as dopamine, pyridyl-alkylamines, aminoethyl-piperazine or L-adrenaline, were devoid of activating effects on TcCA. Since the role of autacoids as many of these compounds investigated here is not known for the life cycle of T. cruzi, our work provides new tools for further investigations of factors connected with this protozoan pathogen infection.

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Metal catalyst and ligand design,
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A new method is described for the determination of optical purity of alpha-amino acid samples in protic media. No derivatization of the analyte or multistep synthesis is required, and high accuracy is obtained from the colorimetric output. Chiral discrimination is achieved through the use of an optically pure trans-1,2-diaminocyclohexane-derived Cu(II)-containing host that differentiates amino acid enantiomers by a factor of about 2. Enantioselective signaling arises from the implementation of an indicator displacement assay based on competitive Cu(II) coordination involving the chiral Cu(II)-containing host, the amino acid guest, and a metal ion indicator. The molecular structure of the host/guest complex was determined by X-ray analysis and exhibits chelation of the Cu(II) center by the amino acid to provide substrate organization. Copyright

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Metal catalyst and ligand design,
Ligand Template Strategies for Catalyst Encapsulation – NCBI

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(Chemical Equation Presented) A new and efficient synthetic route to chiral 3-substituted hexahydropyrroloindoline 18 possessing absolute configurations in accordance with indole alkaloids has been developed from readily available L-tryptophan. The key step relies on the one-pot cascade reaction of oxazolidinone 17 with diazoester, which proceeds through intermolecular cyclopropanation, ring opening, and cyclization.

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Reference:
Metal catalyst and ligand design,
Ligand Template Strategies for Catalyst Encapsulation – NCBI

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Catalysts function by providing an alternate reaction mechanism that has a lower activation energy than would be found in the absence of the catalyst. In some cases, the catalyzed mechanism may include additional steps.In a article, 153-94-6, molcular formula is C11H12N2O2, introducing its new discovery. name: H-D-Trp-OH

Enantiopure tryptophanol is easily obtained from the reduction of its parent natural amino acid trypthophan (available from the chiral pool), and can be used as chiral auxiliary/inductor to control the stereochemical course of a diastereoselective reaction. Furthermore, enantiopure tryptophanol is useful for the syntheses of natural products or biological active molecules containing the aminoalcohol functionality. In this communication, we report the development of a small library of indolo[2,3-a]quinolizidines and evaluation of their activity as N-Methyl D-Aspartate (NMDA) receptor antagonists. The indolo[2,3-a]quinolizidine scaffold was obtained using the following key steps: (i) a stereoselective cyclocondensation of (S)- or (R)-tryptophanol with appropriate racemic delta-oxoesters; (ii) a stereocontrolled cyclization on the indole nucleus. The synthesized enantiopure indolo[2,3-a]quinolizidines were evaluated as NMDA receptor antagonists and one compound was identified to be 2.9-fold more potent as NMDA receptor blocker than amantadine (used in the clinic for Parkinson’s disease). This compound represents a hit compound for the development of novel NMDA receptor antagonists with potential applications in neurodegenerative disorders associated with overactivation of NMDA receptors.

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Metal catalyst and ligand design,
Ligand Template Strategies for Catalyst Encapsulation – NCBI

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A water-soluble amphiphilic poly(phenylacetylene) bearing the bulky aza-18-crown-6-ether pendants forms a one-handed helix induced by L- or D-amino acids and chiral amino alcohols through specific host-guest interactions in water. We now report that such an induced helical poly(phenylacetylene) with a controlled helix sense can selectively trap an achiral benzoxazole cyanine dye among various structurally similar cyanine dyes within its hydrophobic helical cavity inside the polymer in acidic water, resulting in the formation of supramolecular helical aggregates, which exhibit an induced circular dichroism (ICD) in the cyanine dye chromophore region. The supramolecular chirality induced in the cyanine aggregates could be further memorized when the template helical polymer lost its optical activity and further inverted into the opposite helicity. Thereafter, thermal racemization of the helical aggregates slowly took place.

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Metal catalyst and ligand design,
Ligand Template Strategies for Catalyst Encapsulation – NCBI

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Molecular dynamics (MD) simulation is a powerful method for examining the conformational states of biomolecular systems. In the present work, MD simulations were employed to probe into the dynamic modes and conformational states of contryphan-Sm (a Conus venom peptide with D-Trp4) and its analog, [L-Trp4]contryphan-Sm, specifically focusing on the investigation of their structural differences. Molecular modeling showed that the basic cyclic structures of contryphan-Sm and [L-Trp4] contryphan-Sm were similar, with no steric clashes occurring among the amino acid residues. The MD simulations showed that contryphan-Sm assumed a more compact conformation compared to [L-Trp4] contryphan-Sm based on their maximum peptide dimensions and radii of gyration. After ~ 20 ns of MD simulations, the root-mean-square deviation (RMSD) values were lower for almost all of the amino acid residues in contryphan-Sm, with its D-Trp4 showing the highest difference in RMSD from L-Trp4 in [L-Trp4]contryphan-Sm, suggesting that contryphan-Sm had less structural variability. Energy measurements supported this finding, with contryphan-Sm consistently exhibiting lower kinetic energy values compared to [L-Trp4]contryphan-Sm throughout the MD simulations. The Ramachandran plots showed greater variations in phi or psi angles in L-Trp4, Gln5, Pro6 and Trp7 in [L-Trp4] contryphan-Sm than the corresponding residues in contryphan-Sm at the start and end of the MD simulations. Contryphan-Sm showed less solvent accessibility than [L-Trp4]contryphan-Sm as shown by the measurements of their solvent-activated surface areas. Decreased solvent accessibility may be linked to the stacked conformation adopted by contryphan-Sm, aligning D-Trp4, Pro6 and Trp7. Despite the observed motions of the Trp side chains, both contryphan-Sm and [L-Trp4]contryphan-Sm structures do not support the occurrence of intramolecular covalent crosslinking between D/L-Trp4 and Trp7. The observed differences in dynamic modes and conformational states of contryphan-Sm and [L-Trp4]contryphan-Sm are correlated with the greater structural stability of the D-Trp-containing contryphan.

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Metal catalyst and ligand design,
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The determination of aromatic compounds is of importance in many fields. Even if these compounds may be determined by molecular fluorescence and second-order calibration, the methods are relatively complex and require higher mathematics. Here is explored whether the reduction of the dimensions, i.e., transforming two-dimensional data to one-dimensional data followed by a special variable selection and calibration process, is feasible for this purpose. The present work investigated the feasibility of combining competitive adaptive reweighted sampling and elastic component regression for the direct evaluation of the spectra to quantify three components simultaneously. Model population analysis has also been performed. The results confirmed the feasibility of the procedure, which may serve as an alternative method to simultaneously determine aromatics.

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Reference:
Metal catalyst and ligand design,
Ligand Template Strategies for Catalyst Encapsulation – NCBI

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We report the synthesis of the novel scaffolds pyrazino[1,2-b]isoquinoline and pyrrolo[1,2-a]pyrazine displaying the somatostatin pharmacophores. Both classes of compounds contain a pyrazine heterocycle, which can be prepared in a straightforward manner utilizing an intramolecular Fukuyama-Mitsunobu reaction. As both the families derive from amino acids, they can be accessed in high optical purity.

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Reference:
Metal catalyst and ligand design,
Ligand Template Strategies for Catalyst Encapsulation – NCBI